HL_4WFA_027

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

4WFA|1|X|U|1002, 4WFA|1|X|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFA_027 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.0723

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4WFA|1|X|U|999
4WFA|1|X|G|1000
4WFA|1|X|A|1001
4WFA|1|X|U|1002
4WFA|1|X|A|1003
4WFA|1|X|A|1004
4WFA|1|X|G|1005
4WFA|1|X|G|1006

Current chains

Chain X

23S rRNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain Y

5S ribosomal RNA; 5S rRNA