HL_4WFA_063

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WFA|1|X|G|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFA_063 not in the Motif Atlas

Geometric match to HL_5J7L_199

Geometric discrepancy: 0.137

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4WFA|1|X|C|2772
4WFA|1|X|U|2773
4WFA|1|X|G|2774
4WFA|1|X|A|2775
4WFA|1|X|A|2776
4WFA|1|X|A|2777
4WFA|1|X|G|2778
4WFA|1|X|C|2779
4WFA|1|X|A|2780
4WFA|1|X|U|2781
4WFA|1|X|C|2782
4WFA|1|X|U|2783
4WFA|1|X|A|2784
4WFA|1|X|A|2785
4WFA|1|X|G|2786

Current chains

Chain X

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6