HL_4WFA_069

3D structure

PDB id

4WFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid

Experimental method

X-RAY DIFFRACTION

Resolution

3.39 Å

Loop

Sequence

GAGUUAUGUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFA_069 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.328

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4WFA|1|X|G|135
4WFA|1|X|A|136
4WFA|1|X|G|137
4WFA|1|X|U|138
4WFA|1|X|U|139
4WFA|1|X|A|140
4WFA|1|X|U|141
4WFA|1|X|G|142
4WFA|1|X|U|143
4WFA|1|X|C|144

Current chains

Chain X

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L23