HL_4WFB_010

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4WFB|1|X|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFB_010 not in the Motif Atlas

Homologous match to HL_4WF9_010

Geometric discrepancy: 0.0803

The information below is about HL_4WF9_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4WFB|1|X|C|348
4WFB|1|X|U|349
4WFB|1|X|G|350
4WFB|1|X|G|351
4WFB|1|X|A|352
4WFB|1|X|A|353
4WFB|1|X|A|354
4WFB|1|X|G|355

Current chains

Chain X

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L24