HL_4WFB_013

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

AGCACGUGAAAUU

Length

13 nucleotides

Bulged bases

4WFB|1|X|G|432, 4WFB|1|X|A|435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFB_013 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.0849

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WFB|1|X|A|427
4WFB|1|X|G|428
4WFB|1|X|C|429
4WFB|1|X|A|430
4WFB|1|X|C|431
4WFB|1|X|G|432
4WFB|1|X|U|433
4WFB|1|X|G|434
4WFB|1|X|A|435
4WFB|1|X|A|436
4WFB|1|X|A|437
4WFB|1|X|U|438
4WFB|1|X|U|439

Current chains

Chain X

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L28