HL_4WFB_064

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4WFB|1|X|G|2778, 4WFB|1|X|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFB_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1232

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4WFB|1|X|C|2772
4WFB|1|X|U|2773
4WFB|1|X|G|2774
4WFB|1|X|A|2775
4WFB|1|X|A|2776
4WFB|1|X|A|2777
4WFB|1|X|G|2778
4WFB|1|X|C|2779
4WFB|1|X|A|2780
4WFB|1|X|U|2781
4WFB|1|X|C|2782
4WFB|1|X|U|2783
4WFB|1|X|A|2784
4WFB|1|X|A|2785
4WFB|1|X|G|2786

Current chains

Chain X

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6