HL_4WFB_071

3D structure

PDB id

4WFB (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205

Experimental method

X-RAY DIFFRACTION

Resolution

3.43 Å

Loop

Sequence

ACUUAUCGU

Length

9 nucleotides

Bulged bases

4WFB|1|X|U|2238, 4WFB|1|X|U|2240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WFB_071 not in the Motif Atlas

Homologous match to HL_4WF9_069

Geometric discrepancy: 0.2171

The information below is about HL_4WF9_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4WFB|1|X|A|2235
4WFB|1|X|C|2236
4WFB|1|X|U|2237
4WFB|1|X|U|2238
4WFB|1|X|A|2239
4WFB|1|X|U|2240
4WFB|1|X|C|2241
4WFB|1|X|G|2242
4WFB|1|X|U|2243

Current chains

Chain X

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L28