HL_4WOI_033

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

4WOI|1|AX|C|17, 4WOI|1|AX|G|18, 4WOI|1|AX|G|19, 4WOI|1|AX|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_033 not in the Motif Atlas

Homologous match to HL_4V90_032

Geometric discrepancy: 0.161

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4WOI|1|AX|C|13
4WOI|1|AX|A|14
4WOI|1|AX|G|15
4WOI|1|AX|U|16
4WOI|1|AX|C|17
4WOI|1|AX|G|18
4WOI|1|AX|G|19
4WOI|1|AX|U|20
4WOI|1|AX|A|21
4WOI|1|AX|G|22

Current chains

Chain AX

Phenylalanine specific transfer RNA, tRNA-Phe

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA