HL_4WOI_035
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGGUUCGAUUCCG
- Length
- 13 nucleotides
- Bulged bases
- 4WOI|1|AX|C|56, 4WOI|1|AX|G|57
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WOI_035 not in the Motif Atlas
- Homologous match to HL_5EL4_250
- Geometric discrepancy: 0.5812
- The information below is about HL_5EL4_250
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_25222.2
- Basepair signature
- cWW-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4WOI|1|AX|U|51
4WOI|1|AX|G|52
4WOI|1|AX|G|53
4WOI|1|AX|U|54
4WOI|1|AX|U|55
4WOI|1|AX|C|56
4WOI|1|AX|G|57
4WOI|1|AX|A|58
4WOI|1|AX|U|59
4WOI|1|AX|U|60
4WOI|1|AX|C|61
4WOI|1|AX|C|62
4WOI|1|AX|G|63
Current chains
- Chain AX
- Phenylalanine specific transfer RNA, tRNA-Phe
Nearby chains
- Chain B1
- 50S ribosomal protein L33
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 50S ribosomal protein L5
Coloring options: