HL_4WOI_038

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

4WOI|1|BA|A|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_038 not in the Motif Atlas

Homologous match to HL_5J7L_136

Geometric discrepancy: 0.1022

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4WOI|1|BA|G|123
4WOI|1|BA|G|124
4WOI|1|BA|A|125
4WOI|1|BA|A|126
4WOI|1|BA|A|127
4WOI|1|BA|C|128

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23