HL_4WOI_086

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

4WOI|1|BA|A|2211, 4WOI|1|BA|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_086 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.1447

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

4WOI|1|BA|G|2209
4WOI|1|BA|U|2210
4WOI|1|BA|A|2211
4WOI|1|BA|A|2212
4WOI|1|BA|U|2213
4WOI|1|BA|C|2214
4WOI|1|BA|C|2215

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L2