HL_4WOI_150

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

4WOI|1|CA|A|1780, 4WOI|1|CA|U|1781, 4WOI|1|CA|U|1782, 4WOI|1|CA|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_150 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0773

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4WOI|1|CA|U|1777
4WOI|1|CA|U|1778
4WOI|1|CA|U|1779
4WOI|1|CA|A|1780
4WOI|1|CA|U|1781
4WOI|1|CA|U|1782
4WOI|1|CA|A|1783
4WOI|1|CA|A|1784
4WOI|1|CA|A|1785
4WOI|1|CA|A|1786
4WOI|1|CA|A|1787

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2