HL_4WOI_155

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4WOI|1|CA|A|2030, 4WOI|1|CA|A|2031, 4WOI|1|CA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_155 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1219

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

4WOI|1|CA|G|2027
4WOI|1|CA|U|2028
4WOI|1|CA|G|2029
4WOI|1|CA|A|2030
4WOI|1|CA|A|2031
4WOI|1|CA|G|2032
4WOI|1|CA|A|2033
4WOI|1|CA|U|2034
4WOI|1|CA|G|2035
4WOI|1|CA|C|2036

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C0

50S ribosomal protein L32

Chain CD

50S ribosomal protein L3

Chain CR

50S ribosomal protein L21