HL_4WOI_156

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

4WOI|1|CA|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_156 not in the Motif Atlas

Geometric match to HL_6CZR_076

Geometric discrepancy: 0.3913

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

4WOI|1|CA|A|2142
4WOI|1|CA|C|2143
4WOI|1|CA|G|2144
4WOI|1|CA|C|2145
4WOI|1|CA|C|2146
4WOI|1|CA|A|2147
4WOI|1|CA|G|2148
4WOI|1|CA|U|2149

Current chains

Chain CA

23S ribosomal RNA

Nearby chains