HL_4WOI_159

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4WOI|1|CA|A|2268, 4WOI|1|CA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_159 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0773

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4WOI|1|CA|C|2264
4WOI|1|CA|U|2265
4WOI|1|CA|A|2266
4WOI|1|CA|A|2267
4WOI|1|CA|A|2268
4WOI|1|CA|G|2269
4WOI|1|CA|A|2270
4WOI|1|CA|G|2271
4WOI|1|CA|U|2272
4WOI|1|CA|A|2273
4WOI|1|CA|A|2274
4WOI|1|CA|C|2275
4WOI|1|CA|G|2276

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CM

50S ribosomal protein L16

Chain CW

50S ribosomal protein L27