HL_4WOI_162

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_162 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.1266

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4WOI|1|CA|U|2356
4WOI|1|CA|G|2357
4WOI|1|CA|A|2358
4WOI|1|CA|C|2359
4WOI|1|CA|G|2360
4WOI|1|CA|G|2361

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C3

50S ribosomal protein L35

Chain CL

50S ribosomal protein L15

Chain CW

50S ribosomal protein L27