3D structure

PDB id
4WOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UGAAUGGAAG
Length
10 nucleotides
Bulged bases
4WOI|1|CA|A|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4WOI_164 not in the Motif Atlas
Homologous match to HL_5J7L_192
Geometric discrepancy: 0.0994
The information below is about HL_5J7L_192
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53454.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

4WOI|1|CA|U|2404
4WOI|1|CA|G|2405
4WOI|1|CA|A|2406
4WOI|1|CA|A|2407
4WOI|1|CA|U|2408
4WOI|1|CA|G|2409
4WOI|1|CA|G|2410
4WOI|1|CA|A|2411
4WOI|1|CA|A|2412
4WOI|1|CA|G|2413

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain CL
50S ribosomal protein L15

Coloring options:


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