HL_4WOI_166

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

4WOI|1|CA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_166 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1334

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4WOI|1|CA|U|2528
4WOI|1|CA|G|2529
4WOI|1|CA|A|2530
4WOI|1|CA|A|2531
4WOI|1|CA|G|2532
4WOI|1|CA|U|2533
4WOI|1|CA|A|2534
4WOI|1|CA|G|2535

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L36

Chain CG

50S ribosomal protein L6