HL_4WOI_190
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCUCAAC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WOI_190 not in the Motif Atlas
- Homologous match to HL_5J7L_014
- Geometric discrepancy: 0.1596
- The information below is about HL_5J7L_014
- Detailed Annotation
- GNRA-like with tWH
- Broad Annotation
- GNRA
- Motif group
- HL_10453.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4WOI|1|DA|G|617
4WOI|1|DA|C|618
4WOI|1|DA|U|619
4WOI|1|DA|C|620
4WOI|1|DA|A|621
4WOI|1|DA|A|622
4WOI|1|DA|C|623
Current chains
- Chain DA
- 16S ribosomal RNA
Nearby chains
- Chain DD
- 30S ribosomal protein S4
- Chain DP
- 30S ribosomal protein S16
Coloring options: