HL_4WOI_209
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 4WOI|1|DW|C|17, 4WOI|1|DW|G|18, 4WOI|1|DW|G|19, 4WOI|1|DW|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WOI_209 not in the Motif Atlas
- Homologous match to HL_6PMO_003
- Geometric discrepancy: 0.1425
- The information below is about HL_6PMO_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4WOI|1|DW|C|13
4WOI|1|DW|A|14
4WOI|1|DW|G|15
4WOI|1|DW|U|16
4WOI|1|DW|C|17
4WOI|1|DW|G|18
4WOI|1|DW|G|19
4WOI|1|DW|U|20
4WOI|1|DW|A|21
4WOI|1|DW|G|22
Current chains
- Chain DW
- Phenylalanine specific transfer RNA, tRNA-Phe
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CF
- 50S ribosomal protein L5
Coloring options: