HL_4WOI_211
3D structure
- PDB id
- 4WOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUUCGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WOI_211 not in the Motif Atlas
- Homologous match to HL_3ZGZ_003
- Geometric discrepancy: 0.0991
- The information below is about HL_3ZGZ_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
4WOI|1|DW|G|53
4WOI|1|DW|U|54
4WOI|1|DW|U|55
4WOI|1|DW|C|56
4WOI|1|DW|G|57
4WOI|1|DW|A|58
4WOI|1|DW|U|59
4WOI|1|DW|U|60
4WOI|1|DW|C|61
Current chains
- Chain DW
- Phenylalanine specific transfer RNA, tRNA-Phe
Nearby chains
- Chain CA
- Large subunit ribosomal RNA; LSU rRNA
- Chain CF
- 50S ribosomal protein L5
- Chain CM
- 50S ribosomal protein L16
Coloring options: