HL_4WOI_218

3D structure

PDB id

4WOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WOI_218 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.2948

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4WOI|1|DA|U|157
4WOI|1|DA|G|158
4WOI|1|DA|G|159
4WOI|1|DA|A|160
4WOI|1|DA|A|161
4WOI|1|DA|A|162
4WOI|1|DA|C|163
4WOI|1|DA|G|164

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DT

30S ribosomal protein S20