HL_4WPO_078

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0883

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4WPO|1|BA|C|320
4WPO|1|BA|A|321
4WPO|1|BA|C|322
4WPO|1|BA|U|323
4WPO|1|BA|G|324
4WPO|1|BA|A|325
4WPO|1|BA|G|326
4WPO|1|BA|A|327
4WPO|1|BA|C|328
4WPO|1|BA|A|329
4WPO|1|BA|C|330
4WPO|1|BA|G|331
4WPO|1|BA|G|332
4WPO|1|BA|G|333

Current chains

Chain BA

16S Ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20