HL_4WPO_141

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4WPO|1|CA|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_141 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.2189

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4WPO|1|CA|C|1064
4WPO|1|CA|U|1065
4WPO|1|CA|U|1066
4WPO|1|CA|A|1067
4WPO|1|CA|G|1068
4WPO|1|CA|A|1069
4WPO|1|CA|A|1070
4WPO|1|CA|G|1071
4WPO|1|CA|C|1072
4WPO|1|CA|A|1073
4WPO|1|CA|G|1074

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CL

50S ribosomal protein L11

Chain CQ

50S ribosomal protein L16

Chain DZ

50S ribosomal protein L9,Elongation factor G