HL_4WPO_204

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GAAGCAACGC

Length

10 nucleotides

Bulged bases

4WPO|1|DA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_204 not in the Motif Atlas

Homologous match to HL_4LFB_021

Geometric discrepancy: 0.1009

The information below is about HL_4LFB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WPO|1|DA|G|963
4WPO|1|DA|A|964
4WPO|1|DA|A|965
4WPO|1|DA|G|966
4WPO|1|DA|C|967
4WPO|1|DA|A|968
4WPO|1|DA|A|969
4WPO|1|DA|C|970
4WPO|1|DA|G|971
4WPO|1|DA|C|972

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DI

30S ribosomal protein S9

Chain DJ

30S ribosomal protein S10

Chain DM

30S ribosomal protein S13

Chain DN

30S ribosomal protein S14 type Z

Chain DW

Transfer RNA; tRNA

Chain DX

Transfer RNA; tRNA