HL_4WPO_211

3D structure

PDB id

4WPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GGCAAC

Length

6 nucleotides

Bulged bases

4WPO|1|DA|C|1267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WPO_211 not in the Motif Atlas

Homologous match to HL_5J7L_027

Geometric discrepancy: 0.1693

The information below is about HL_5J7L_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4WPO|1|DA|G|1265
4WPO|1|DA|G|1266
4WPO|1|DA|C|1267
4WPO|1|DA|A|1268
4WPO|1|DA|A|1269
4WPO|1|DA|C|1270

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DM

30S ribosomal protein S13

Chain DS

30S ribosomal protein S19

Chain DU

30S ribosomal protein Thx