HL_4WQ1_035

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_035 not in the Motif Atlas

Homologous match to HL_7RQB_004

Geometric discrepancy: 0.2546

The information below is about HL_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79921.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

15

Unit IDs

4WQ1|1|14|G|137|||A
4WQ1|1|14|G|138
4WQ1|1|14|G|139
4WQ1|1|14|A|140
4WQ1|1|14|A|141
4WQ1|1|14|C|141|||A

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain G5

50S ribosomal protein L29