HL_4WQ1_082

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4WQ1|1|14|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_082 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1488

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4WQ1|1|14|G|1949
4WQ1|1|14|G|1950
4WQ1|1|14|U|1951
4WQ1|1|14|A|1952
4WQ1|1|14|A|1953
4WQ1|1|14|G|1954
4WQ1|1|14|U|1955
4WQ1|1|14|U|1956
4WQ1|1|14|C|1957

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1G

Small subunit ribosomal RNA; SSU rRNA

Chain 25

50S ribosomal protein L14