HL_4WQ1_175

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

4WQ1|1|1H|C|1493, 4WQ1|1|1H|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_175 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.1798

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4WQ1|1|1H|G|1492
4WQ1|1|1H|C|1493
4WQ1|1|1H|A|1494
4WQ1|1|1H|A|1495
4WQ1|1|1H|A|1496
4WQ1|1|1H|U|1497
4WQ1|1|1H|C|1498

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2