HL_4WQ1_188

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4WQ1|1|1H|A|2030, 4WQ1|1|1H|A|2031, 4WQ1|1|1H|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_188 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0709

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4WQ1|1|1H|G|2027
4WQ1|1|1H|U|2028
4WQ1|1|1H|G|2029
4WQ1|1|1H|A|2030
4WQ1|1|1H|A|2031
4WQ1|1|1H|G|2032
4WQ1|1|1H|A|2033
4WQ1|1|1H|U|2034
4WQ1|1|1H|G|2035
4WQ1|1|1H|C|2036

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain D8

50S ribosomal protein L21

Chain N8

50S ribosomal protein L32