HL_4WQ1_190

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGGAUG

Length

6 nucleotides

Bulged bases

4WQ1|1|1H|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_190 not in the Motif Atlas

Homologous match to HL_7RQB_052

Geometric discrepancy: 0.3575

The information below is about HL_7RQB_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_98426.1

Basepair signature

cWW-F

Number of instances in this motif group

6

Unit IDs

4WQ1|1|1H|C|2209
4WQ1|1|1H|G|2210
4WQ1|1|1H|G|2211
4WQ1|1|1H|A|2212
4WQ1|1|1H|U|2213
4WQ1|1|1H|G|2215

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28