HL_4WQ1_192

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4WQ1|1|1H|A|2268, 4WQ1|1|1H|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_192 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0764

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4WQ1|1|1H|C|2264
4WQ1|1|1H|U|2265
4WQ1|1|1H|A|2266
4WQ1|1|1H|A|2267
4WQ1|1|1H|A|2268
4WQ1|1|1H|A|2269
4WQ1|1|1H|G|2270
4WQ1|1|1H|G|2271
4WQ1|1|1H|U|2272
4WQ1|1|1H|A|2273
4WQ1|1|1H|A|2274
4WQ1|1|1H|C|2275
4WQ1|1|1H|G|2276

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 88

50S ribosomal protein L16

Chain I8

50S ribosomal protein L27