HL_4WQ1_230

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCUACGGG

Length

8 nucleotides

Bulged bases

4WQ1|1|13|A|344, 4WQ1|1|13|C|345

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_230 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3989

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4WQ1|1|13|C|341
4WQ1|1|13|C|342
4WQ1|1|13|U|343
4WQ1|1|13|A|344
4WQ1|1|13|C|345
4WQ1|1|13|G|346
4WQ1|1|13|G|347
4WQ1|1|13|G|348

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 68

50S ribosomal protein L14

Chain B8

50S ribosomal protein L19

Chain BI

30S ribosomal protein S20