HL_4WQ1_254

3D structure

PDB id

4WQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Tyr and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

4WQ1|1|14|G|2308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQ1_254 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.401

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4WQ1|1|14|G|2304
4WQ1|1|14|A|2305
4WQ1|1|14|C|2306
4WQ1|1|14|G|2307
4WQ1|1|14|G|2308
4WQ1|1|14|A|2309
4WQ1|1|14|A|2310
4WQ1|1|14|A|2311
4WQ1|1|14|U|2312

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 2L

Transfer RNA; tRNA

Chain 49

50S ribosomal protein L5