HL_4WQF_188

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQF_188 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.097

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4WQF|1|DA|U|296
4WQF|1|DA|G|297
4WQF|1|DA|A|298
4WQF|1|DA|G|299
4WQF|1|DA|A|300
4WQF|1|DA|G|301

Current chains

Chain DA

16S Ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S4

Chain DE

30S ribosomal protein S5

Chain DQ

30S ribosomal protein S17