HL_4WQF_226

3D structure

PDB id

4WQF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQF_226 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.2737

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA with extra near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4WQF|1|CA|C|2855
4WQF|1|CA|C|2856
4WQF|1|CA|G|2857
4WQF|1|CA|C|2858
4WQF|1|CA|G|2859
4WQF|1|CA|A|2860
4WQF|1|CA|G|2861
4WQF|1|CA|G|2862

Current chains

Chain CA

23S Ribosomal RNA

Nearby chains

Chain CT

50S ribosomal protein L19

Chain DA

Small subunit ribosomal RNA; SSU rRNA