HL_4WQR_086

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

4WQR|1|14|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_086 not in the Motif Atlas

Homologous match to HL_4WF9_049

Geometric discrepancy: 0.1145

The information below is about HL_4WF9_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

4WQR|1|14|C|2248
4WQR|1|14|U|2249
4WQR|1|14|G|2250
4WQR|1|14|G|2251
4WQR|1|14|G|2252
4WQR|1|14|G|2253
4WQR|1|14|C|2254
4WQR|1|14|G|2255
4WQR|1|14|G|2256

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 2L

Transfer RNA; tRNA

Chain 45

50S ribosomal protein L16

Chain E5

50S ribosomal protein L27