HL_4WQR_162

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GCCCACCAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_162 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3182

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4WQR|1|1H|G|883
4WQR|1|1H|C|884
4WQR|1|1H|C|885
4WQR|1|1H|C|886
4WQR|1|1H|A|887
4WQR|1|1H|C|888
4WQR|1|1H|C|889
4WQR|1|1H|A|890
4WQR|1|1H|G|892
4WQR|1|1H|C|893

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 4I

30S ribosomal protein S13

Chain AI

30S ribosomal protein S19