HL_4WQR_186

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4WQR|1|1H|A|2030, 4WQR|1|1H|A|2031, 4WQR|1|1H|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_186 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0808

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4WQR|1|1H|G|2027
4WQR|1|1H|U|2028
4WQR|1|1H|G|2029
4WQR|1|1H|A|2030
4WQR|1|1H|A|2031
4WQR|1|1H|G|2032
4WQR|1|1H|A|2033
4WQR|1|1H|U|2034
4WQR|1|1H|G|2035
4WQR|1|1H|C|2036

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain D8

50S ribosomal protein L21

Chain N8

50S ribosomal protein L32