HL_4WQR_190

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4WQR|1|1H|A|2268, 4WQR|1|1H|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_190 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0753

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4WQR|1|1H|C|2264
4WQR|1|1H|U|2265
4WQR|1|1H|A|2266
4WQR|1|1H|A|2267
4WQR|1|1H|A|2268
4WQR|1|1H|A|2269
4WQR|1|1H|G|2270
4WQR|1|1H|G|2271
4WQR|1|1H|U|2272
4WQR|1|1H|A|2273
4WQR|1|1H|A|2274
4WQR|1|1H|C|2275
4WQR|1|1H|G|2276

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 16

5S ribosomal RNA; 5S rRNA

Chain 88

50S ribosomal protein L16

Chain I8

50S ribosomal protein L27