HL_4WQR_191

3D structure

PDB id

4WQR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.15 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQR_191 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.2761

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4WQR|1|1H|G|2303
4WQR|1|1H|G|2304
4WQR|1|1H|A|2305
4WQR|1|1H|C|2306
4WQR|1|1H|G|2307
4WQR|1|1H|G|2308
4WQR|1|1H|A|2309
4WQR|1|1H|A|2310
4WQR|1|1H|A|2311
4WQR|1|1H|U|2312
4WQR|1|1H|C|2313

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 16

5S ribosomal RNA; 5S rRNA

Chain 41

50S ribosomal protein L5