HL_4WQU_020

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

4WQU|1|AA|C|670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_020 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.2904

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4WQU|1|AA|C|666
4WQU|1|AA|G|667
4WQU|1|AA|A|668
4WQU|1|AA|A|669
4WQU|1|AA|C|670
4WQU|1|AA|A|671
4WQU|1|AA|G|672

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A6

50S ribosomal protein L33

Chain A8

50S ribosomal protein L35

Chain AP

50S ribosomal protein L15