HL_4WQU_028

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

4WQU|1|AA|A|1116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_028 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.2286

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|C|1110
4WQU|1|AA|U|1111
4WQU|1|AA|U|1112
4WQU|1|AA|A|1113
4WQU|1|AA|G|1114
4WQU|1|AA|A|1115
4WQU|1|AA|A|1116
4WQU|1|AA|G|1117
4WQU|1|AA|C|1118
4WQU|1|AA|A|1119
4WQU|1|AA|G|1120

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L11

Chain BZ

50S ribosomal protein L9,Elongation factor G