HL_4WQU_044

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UUUACCAAAAA

Length

11 nucleotides

Bulged bases

4WQU|1|AA|A|1811, 4WQU|1|AA|C|1812, 4WQU|1|AA|C|1813, 4WQU|1|AA|A|1817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_044 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0565

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4WQU|1|AA|U|1808
4WQU|1|AA|U|1809
4WQU|1|AA|U|1810
4WQU|1|AA|A|1811
4WQU|1|AA|C|1812
4WQU|1|AA|C|1813
4WQU|1|AA|A|1814
4WQU|1|AA|A|1815
4WQU|1|AA|A|1816
4WQU|1|AA|A|1817
4WQU|1|AA|A|1818

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A7

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2

Chain AW

50S ribosomal protein L22