HL_4WQU_047

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4WQU|1|AA|A|1935

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_047 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1482

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4WQU|1|AA|G|1932
4WQU|1|AA|U|1933
4WQU|1|AA|A|1934
4WQU|1|AA|A|1935
4WQU|1|AA|C|1936
4WQU|1|AA|U|1937
4WQU|1|AA|A|1938
4WQU|1|AA|U|1939
4WQU|1|AA|A|1940
4WQU|1|AA|A|1941
4WQU|1|AA|C|1942

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BW

Transfer RNA; tRNA