HL_4WQU_049

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4WQU|1|AA|A|2052, 4WQU|1|AA|A|2053, 4WQU|1|AA|G|2054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_049 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.0575

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4WQU|1|AA|G|2049
4WQU|1|AA|U|2050
4WQU|1|AA|G|2051
4WQU|1|AA|A|2052
4WQU|1|AA|A|2053
4WQU|1|AA|G|2054
4WQU|1|AA|A|2055
4WQU|1|AA|U|2056
4WQU|1|AA|G|2057
4WQU|1|AA|C|2058

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AU

50S ribosomal protein L20