HL_4WQU_053

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4WQU|1|AA|A|2280, 4WQU|1|AA|C|2287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0492

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4WQU|1|AA|C|2276
4WQU|1|AA|U|2277
4WQU|1|AA|A|2278
4WQU|1|AA|A|2279
4WQU|1|AA|A|2280
4WQU|1|AA|A|2281
4WQU|1|AA|G|2282
4WQU|1|AA|G|2283
4WQU|1|AA|U|2284
4WQU|1|AA|A|2285
4WQU|1|AA|A|2286
4WQU|1|AA|C|2287
4WQU|1|AA|G|2288

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L27

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AQ

50S ribosomal protein L16