HL_4WQU_056

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_056 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0573

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4WQU|1|AA|C|2367
4WQU|1|AA|C|2368
4WQU|1|AA|U|2369
4WQU|1|AA|G|2370
4WQU|1|AA|C|2371
4WQU|1|AA|A|2372
4WQU|1|AA|A|2373
4WQU|1|AA|G|2374

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A0

50S ribosomal protein L27

Chain A8

50S ribosomal protein L35

Chain AP

50S ribosomal protein L15