HL_4WQU_060

3D structure

PDB id

4WQU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4WQU|1|AA|G|2541

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4WQU_060 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.0565

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4WQU|1|AA|U|2540
4WQU|1|AA|G|2541
4WQU|1|AA|A|2542
4WQU|1|AA|A|2543
4WQU|1|AA|G|2544
4WQU|1|AA|A|2545
4WQU|1|AA|A|2546
4WQU|1|AA|G|2547

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A9

50S ribosomal protein L36

Chain AH

50S ribosomal protein L6

Chain BZ

50S ribosomal protein L9,Elongation factor G