HL_4WQU_104
3D structure
- PDB id
- 4WQU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- 4WQU|1|BW|U|33, 4WQU|1|BW|A|38
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4WQU_104 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.4645
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
4WQU|1|BW|G|30
4WQU|1|BW|A|31
4WQU|1|BW|PSU|32
4WQU|1|BW|U|33
4WQU|1|BW|G|34
4WQU|1|BW|A|35
4WQU|1|BW|A|36
4WQU|1|BW|MIA|37
4WQU|1|BW|A|38
4WQU|1|BW|PSU|39
4WQU|1|BW|C|40
Current chains
- Chain BW
- P-site tRNA
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BI
- 30S ribosomal protein S9
- Chain BM
- 30S ribosomal protein S13
- Chain BV
- mRNA
- Chain BY
- Transfer RNA; tRNA
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